PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do001180.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family GATA
Protein Properties Length: 198aa    MW: 22179 Da    PI: 9.8637
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do001180.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA63.32.8e-203165135
        GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                C+ C+ttkTplWR gp+g+k+LCnaCG++yrk+++
  Do001180.1 31 CADCHTTKTPLWRGGPEGPKSLCNACGIRYRKRRR 65
                ********************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011413.4422561IPR000679Zinc finger, GATA-type
SMARTSM004015.5E-182575IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.42E-132764No hitNo description
CDDcd002022.23E-143066No hitNo description
Gene3DG3DSA:3.30.50.103.8E-163065IPR013088Zinc finger, NHR/GATA-type
PROSITE patternPS0034403156IPR000679Zinc finger, GATA-type
PfamPF003204.5E-183165IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MGMEMEMETE TDPNTSPSPD DPTASGEAKA CADCHTTKTP LWRGGPEGPK SLCNACGIRY  60
RKRRRQALGL DAAAAAADPQ QDQQQTKKKA ADPQQDHQQQ KKADPQEDQQ QPRKADPQED  120
QQQPRKKAAS SSTNNKKEKE KDKKKKDRQV TVELRVVGFG KEVMLKQRRQ MRRKKCMSEE  180
ERAAVLLMAL SSGVIYAS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16064RKRRR
2124145RKKAASSSTNNKKEKEKDKKKK
3136145KEKEKDKKKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9674445e-56EU967444.1 Zea mays clone 303140 GATA zinc finger family protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001150557.12e-75GATA zinc finger family protein
TrEMBLK3XM602e-79K3XM60_SETIT; Uncharacterized protein
STRINGSi002983m6e-79(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24183892
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06740.17e-19GATA transcription factor 15